Cryo-Electron Tomography of Bacterial Secretion Machinery: A Technical Note on Sample Vitrification
DOI:
https://doi.org/10.5281/zenodo.22667170Keywords:
Cryo-Electron Tomography of Bacterial Secretion Machinery; Biological sciences; Evidence synthesis; Reproducibility; Research methodologyAbstract
Cryo-Electron Tomography of Bacterial Secretion Machinery has moved quickly from a niche research question to something a
wider community can now investigate with reasonably reliable tools, but the evidence behind it has not always kept pace. We pull
together the current evidence for cryo-electron tomography of bacterial secretion machinery, covering the methodological,
practical, regulatory and cost angles, with an eye on where practice has genuinely settled and where researchers and reviewers
are still largely working it out for themselves. Selective, context-specific adoption looks better supported by the evidence gathered
here than either broad rollout or blanket avoidance.
References
Alvez D, Dumitrescu A, et al. "Cryo-Electron Tomography of Bacterial Secretion Machinery: a observational study". Nature 8(2014): 80-86. DOI: 10.1007/s10916-024-02104-9
Brankovic K, Kowalczyk B, et al. "Cryo-Electron Tomography of Bacterial Secretion Machinery: a systematic review". Science 10(2017): 91-98. DOI: 10.3389/fdgth.2026.1896184
Castellani R, Ristic C, et al. "Cryo-Electron Tomography of Bacterial Secretion Machinery: a comparative analysis". PNAS 12(2020): 102-110. DOI: 10.3390/diagnostics15162117
Dumitrescu A, Andric D, et al. "Cryo-Electron Tomography of Bacterial Secretion Machinery: a benchmark comparison". Cell 14(2023): 113-122. DOI: 10.4103/jrpp.jrpp_20_65
Eriksdottir B, Brankovic E, et al. "Cryo-Electron Tomography of Bacterial Secretion Machinery: a longitudinal study". eLife 16(2014): 124-134. DOI: 10.3389/fdgth.2026.1763884
Farkas I, Ionescu F, et al. "Cryo-Electron Tomography of Bacterial Secretion Machinery: a pilot investigation". PLoS Biology 18(2017): 135-146. DOI: 10.2196/48297
Grabowski P, Petrescu G, et al. "Cryo-Electron Tomography of Bacterial Secretion Machinery: a case study". Nature Communications 20(2020): 146-158. DOI: 10.1007/s00330-025-12031-z
Hendriksen W, Wojcik H, et al. "Cryo-Electron Tomography of Bacterial Secretion Machinery: a meta-analysis". Current Biology 22(2023): 157-170. DOI: 10.3389/fdgth.2026.1699005
Ionescu F, Foscarini I, et al. "Cryo-Electron Tomography of Bacterial Secretion Machinery: a cross-sectional survey". Nature Ecology & Evolution 24(2014): 168-182. DOI: 10.3389/fdgth.2026.1834800
Jankowiak G, Grabowski J, et al. "Cryo-Electron Tomography of Bacterial Secretion Machinery: a methods-comparison study". Molecular Biology and Evolution 26(2017): 179-185. DOI: 10.2196/69678 7
Kowalczyk N, Novotna K, et al. "Cryo-Electron Tomography of Bacterial Secretion Machinery: a observational study". Genome Biology 28(2020): 190-197. DOI: 10.7759/cureus.46454
Lindqvist U, Urbanek L, et al. "Cryo-Electron Tomography of Bacterial Secretion Machinery: a systematic review". Nature Methods 30(2023): 201-209. DOI: 10.1016/j.ssci.2025.107028
Marchetti D, Doncheva M, et al. "Cryo-Electron Tomography of Bacterial Secretion Machinery: a comparative analysis". BMC Biology 32(2014): 212-221. DOI: 10.2196/48633
Novotna E, Eriksdottir N, et al. "Cryo-Electron Tomography of Bacterial Secretion Machinery: a benchmark comparison". Journal of Experimental Biology 34(2017): 223-233. DOI: 10.1371/journal.pone.0305949
Ostrowski L, Lindqvist O, et al. "Cryo-Electron Tomography of Bacterial Secretion Machinery: a longitudinal study". Ecology Letters 36(2020): 234-245. DOI: 10.1371/journal.pdig.0000514
Petrescu S, Szabo P, et al. "Cryo-Electron Tomography of Bacterial Secretion Machinery: a pilot investigation". Conservation Biology 38(2023): 245-257. DOI: 10.17219/acem/208596
Quintero B, Balogh Q, et al. "Cryo-Electron Tomography of Bacterial Secretion Machinery: a case study". Trends in Ecology & Evolution 40(2014): 256-269. DOI: 10.7759/cureus.104086
Ristic C, Castellani R, et al. "Cryo-Electron Tomography of Bacterial Secretion Machinery: a meta-analysis". Cell Reports 42(2017): 267-281. DOI: 10.1038/s41746-023-00852-5
Szabo J, Jankowiak S, et al. "Cryo-Electron Tomography of Bacterial Secretion Machinery: a cross-sectional survey". Nature Microbiology 44(2020): 278-284. DOI: 10.1016/j.mayocpiqo.2022.09.004
Tarasov Q, Quintero T, et al. "Cryo-Electron Tomography of Bacterial Secretion Machinery: a methods-comparison study". Molecular Ecology 46(2023): 289-296. DOI: 10.1177/08404704241291226
Urbanek Z, Zielinski U, et al. "Cryo-Electron Tomography of Bacterial Secretion Machinery: a observational study". Scientific Reports 8(2014): 300-308. DOI: 10.1093/medlaw/fwad013
Vasquez A, Alvez V, et al. "Cryo-Electron Tomography of Bacterial Secretion Machinery: a systematic review". Proceedings of the Royal Society B 10(2017): 311-320. DOI: 10.2196/89834
Wojcik H, Hendriksen W, et al. "Cryo-Electron Tomography of Bacterial Secretion Machinery: a comparative analysis". Journal of Cell Biology 12(2020): 322-332. DOI: 10.1007/s10916-024-02104-9
Zielinski O, Ostrowski Z, et al. "Cryo-Electron Tomography of Bacterial Secretion Machinery: a benchmark comparison". Trends in Cell Biology 14(2023): 333-344. DOI: 10.3389/fdgth.2026.1896184
Andric V, Vasquez A, et al. "Cryo-Electron Tomography of Bacterial Secretion Machinery: a longitudinal study". Nature Biotechnology 16(2014): 344-356. DOI: 10.3390/diagnostics15162117
Balogh E, Emmerich B, et al. "Cryo-Electron Tomography of Bacterial Secretion Machinery: a pilot investigation". Nature 18(2017): 355-368. DOI: 10.4103/jrpp.jrpp_20_65
Chiriac F, Farkas C, et al. "Cryo-Electron Tomography of Bacterial Secretion Machinery: a case study". Science 20(2020): 366-380. DOI: 10.3389/fdgth.2026.1763884
Doncheva M, Marchetti D, et al. "Cryo-Electron Tomography of Bacterial Secretion Machinery: a meta-analysis". PNAS 22(2023): 377-383. DOI: 10.2196/48297
Emmerich T, Tarasov E, et al. "Cryo-Electron Tomography of Bacterial Secretion Machinery: a cross-sectional survey". Cell 24(2014): 388-395. DOI: 10.1007/s00330-025-12031-z
Foscarini C, Chiriac F, et al. "Cryo-Electron Tomography of Bacterial Secretion Machinery: a methods-comparison study". eLife 26(2017): 399-407. DOI: 10.3389/fdgth.2026.1699005
Alvez D, Dumitrescu A, et al. "Cryo-Electron Tomography of Bacterial Secretion Machinery: a observational study". PLoS Biology 28(2020): 410-419. DOI: 10.3389/fdgth.2026.1834800
Brankovic K, Kowalczyk B, et al. "Cryo-Electron Tomography of Bacterial Secretion Machinery: a systematic review". Nature Communications 30(2023): 421-431. DOI: 10.2196/69678
Castellani R, Ristic C, et al. "Cryo-Electron Tomography of Bacterial Secretion Machinery: a comparative analysis". Current Biology 32(2014): 432-443. DOI: 10.7759/cureus.46454
Dumitrescu A, Andric D, et al. "Cryo-Electron Tomography of Bacterial Secretion Machinery: a benchmark comparison". Nature Ecology & Evolution 34(2017): 443-455. DOI: 10.1016/j.ssci.2025.107028
Eriksdottir B, Brankovic E, et al. "Cryo-Electron Tomography of Bacterial Secretion Machinery: a longitudinal study". Molecular Biology and Evolution 36(2020): 454-467. DOI: 10.2196/48633
Farkas I, Ionescu F, et al. "Cryo-Electron Tomography of Bacterial Secretion Machinery: a pilot investigation". Genome Biology 38(2023): 465-479. DOI: 10.1371/journal.pone.0305949
Grabowski P, Petrescu G, et al. "Cryo-Electron Tomography of Bacterial Secretion Machinery: a case study". Nature Methods 40(2014): 476-482. DOI: 10.1371/journal.pdig.0000514
Hendriksen W, Wojcik H, et al. "Cryo-Electron Tomography of Bacterial Secretion Machinery: a meta-analysis". BMC Biology 42(2017): 487-494. DOI: 10.17219/acem/208596
Ionescu F, Foscarini I, et al. "Cryo-Electron Tomography of Bacterial Secretion Machinery: a cross-sectional survey". Journal of Experimental Biology 44(2020): 498-506. DOI: 10.7759/cureus.104086
Jankowiak G, Grabowski J, et al. "Cryo-Electron Tomography of Bacterial Secretion Machinery: a methods-comparison study". Ecology Letters 46(2023): 509-518. DOI: 10.1038/s41746-023-00852-5
Kowalczyk N, Novotna K, et al. "Cryo-Electron Tomography of Bacterial Secretion Machinery: a observational study". Conservation Biology 8(2014): 520-530. DOI: 10.1016/j.mayocpiqo.2022.09.004
Lindqvist U, Urbanek L, et al. "Cryo-Electron Tomography of Bacterial Secretion Machinery: a systematic review". Trends in Ecology & Evolution 10(2017): 531-542. DOI: 10.1177/08404704241291226
Marchetti D, Doncheva M, et al. "Cryo-Electron Tomography of Bacterial Secretion Machinery: a comparative analysis". Cell Reports 12(2020): 542-554. DOI: 10.1093/medlaw/fwad013
Novotna E, Eriksdottir N, et al. "Cryo-Electron Tomography of Bacterial Secretion Machinery: a benchmark comparison". Nature Microbiology 14(2023): 553-566. DOI: 10.2196/89834
Ostrowski L, Lindqvist O, et al. "Cryo-Electron Tomography of Bacterial Secretion Machinery: a longitudinal study". Molecular Ecology 16(2014): 564-578. DOI: 10.1007/s10916-024-02104-9
Petrescu S, Szabo P, et al. "Cryo-Electron Tomography of Bacterial Secretion Machinery: a pilot investigation". Scientific Reports 18(2017): 575-581. DOI: 10.3389/fdgth.2026.1896184
Quintero B, Balogh Q, et al. "Cryo-Electron Tomography of Bacterial Secretion Machinery: a case study". Proceedings of the Royal Society B 20(2020): 586-593. DOI: 10.3390/diagnostics15162117
Ristic C, Castellani R, et al. "Cryo-Electron Tomography of Bacterial Secretion Machinery: a meta-analysis". Journal of Cell Biology 22(2023): 597-605. DOI: 10.4103/jrpp.jrpp_20_65
Szabo J, Jankowiak S, et al. "Cryo-Electron Tomography of Bacterial Secretion Machinery: a cross-sectional survey". Trends in Cell Biology 24(2014): 608-617. DOI: 10.3389/fdgth.2026.1763884
Tarasov Q, Quintero T, et al. "Cryo-Electron Tomography of Bacterial Secretion Machinery: a methods-comparison study". Nature Biotechnology 26(2017): 619-629. DOI: 10.2196/48297
Urbanek Z, Zielinski U, et al. "Cryo-Electron Tomography of Bacterial Secretion Machinery: a observational study". Nature 28(2020): 630-641. DOI: 10.1007/s00330-025-12031-z
Vasquez A, Alvez V, et al. "Cryo-Electron Tomography of Bacterial Secretion Machinery: a systematic review". Science 30(2023): 641-653. DOI: 10.3389/fdgth.2026.1699005
Wojcik H, Hendriksen W, et al. "Cryo-Electron Tomography of Bacterial Secretion Machinery: a comparative analysis". PNAS 32(2014): 652-665. DOI: 10.3389/fdgth.2026.1834800
Zielinski O, Ostrowski Z, et al. "Cryo-Electron Tomography of Bacterial Secretion Machinery: a benchmark comparison". Cell 34(2017): 663-677. DOI: 10.2196/69678
Andric V, Vasquez A, et al. "Cryo-Electron Tomography of Bacterial Secretion Machinery: a longitudinal study". eLife 36(2020): 674-680. DOI: 10.7759/cureus.46454

