Tumour-Adjacent Normal Tissue as a Reference: A Case Study of Molecular Field Effects
DOI:
https://doi.org/10.5281/zenodo.22668135Keywords:
Tumour-Adjacent Normal Tissue as a Reference; Biological sciences; Evidence synthesis; Reproducibility; Research methodologyAbstract
There is real interest in tumour-adjacent normal tissue as a reference right now, and real uncertainty about exactly where it
delivers the most value. We pull together the current evidence for tumour-adjacent normal tissue as a reference, covering the
methodological, practical, regulatory and cost angles, with an eye on where practice has genuinely settled and where researchers
and reviewers are still largely working it out for themselves. Selective, context-specific adoption looks better supported by the
evidence gathered here than either broad rollout or blanket avoidance.
References
Alvez D, Dumitrescu A, et al. "Tumour-Adjacent Normal Tissue as a Reference: a observational study". Nature 8(2014): 80-86. DOI: 10.1177/08404704241291226
Brankovic K, Kowalczyk B, et al. "Tumour-Adjacent Normal Tissue as a Reference: a systematic review". Science 10(2017): 91-98. DOI: 10.1093/medlaw/fwad013
Castellani R, Ristic C, et al. "Tumour-Adjacent Normal Tissue as a Reference: a comparative analysis". PNAS 12(2020): 102-110. DOI: 10.2196/89834
Dumitrescu A, Andric D, et al. "Tumour-Adjacent Normal Tissue as a Reference: a benchmark comparison". Cell 14(2023): 113-122. DOI: 10.1007/s10916-024-02104-9
Eriksdottir B, Brankovic E, et al. "Tumour-Adjacent Normal Tissue as a Reference: a longitudinal study". eLife 16(2014): 124-134. DOI: 10.3389/fdgth.2026.1896184
Farkas I, Ionescu F, et al. "Tumour-Adjacent Normal Tissue as a Reference: a pilot investigation". PLoS Biology 18(2017): 135-146. DOI: 10.3390/diagnostics15162117
Grabowski P, Petrescu G, et al. "Tumour-Adjacent Normal Tissue as a Reference: a case study". Nature Communications 20(2020):7 146-158. DOI: 10.4103/jrpp.jrpp_20_65
Hendriksen W, Wojcik H, et al. "Tumour-Adjacent Normal Tissue as a Reference: a meta-analysis". Current Biology 22(2023): 157-170. DOI: 10.3389/fdgth.2026.1763884
Ionescu F, Foscarini I, et al. "Tumour-Adjacent Normal Tissue as a Reference: a cross-sectional survey". Nature Ecology & Evolution 24(2014): 168-182. DOI: 10.2196/48297
Jankowiak G, Grabowski J, et al. "Tumour-Adjacent Normal Tissue as a Reference: a methods-comparison study". Molecular Biology and Evolution 26(2017): 179-185. DOI: 10.1007/s00330-025-12031-z
Kowalczyk N, Novotna K, et al. "Tumour-Adjacent Normal Tissue as a Reference: a observational study". Genome Biology 28(2020): 190-197. DOI: 10.3389/fdgth.2026.1699005
Lindqvist U, Urbanek L, et al. "Tumour-Adjacent Normal Tissue as a Reference: a systematic review". Nature Methods 30(2023): 201-209. DOI: 10.3389/fdgth.2026.1834800
Marchetti D, Doncheva M, et al. "Tumour-Adjacent Normal Tissue as a Reference: a comparative analysis". BMC Biology 32(2014): 212-221. DOI: 10.2196/69678
Novotna E, Eriksdottir N, et al. "Tumour-Adjacent Normal Tissue as a Reference: a benchmark comparison". Journal of Experimental Biology 34(2017): 223-233. DOI: 10.7759/cureus.46454
Ostrowski L, Lindqvist O, et al. "Tumour-Adjacent Normal Tissue as a Reference: a longitudinal study". Ecology Letters 36(2020): 234-245. DOI: 10.1016/j.ssci.2025.107028
Petrescu S, Szabo P, et al. "Tumour-Adjacent Normal Tissue as a Reference: a pilot investigation". Conservation Biology 38(2023): 245-257. DOI: 10.2196/48633
Quintero B, Balogh Q, et al. "Tumour-Adjacent Normal Tissue as a Reference: a case study". Trends in Ecology & Evolution 40(2014): 256-269. DOI: 10.1371/journal.pone.0305949
Ristic C, Castellani R, et al. "Tumour-Adjacent Normal Tissue as a Reference: a meta-analysis". Cell Reports 42(2017): 267-281. DOI: 10.1371/journal.pdig.0000514
Szabo J, Jankowiak S, et al. "Tumour-Adjacent Normal Tissue as a Reference: a cross-sectional survey". Nature Microbiology 44(2020): 278-284. DOI: 10.17219/acem/208596
Tarasov Q, Quintero T, et al. "Tumour-Adjacent Normal Tissue as a Reference: a methods-comparison study". Molecular Ecology 46(2023): 289-296. DOI: 10.7759/cureus.104086
Urbanek Z, Zielinski U, et al. "Tumour-Adjacent Normal Tissue as a Reference: a observational study". Scientific Reports 8(2014): 300-308. DOI: 10.1038/s41746-023-00852-5
Vasquez A, Alvez V, et al. "Tumour-Adjacent Normal Tissue as a Reference: a systematic review". Proceedings of the Royal Society B 10(2017): 311-320. DOI: 10.1016/j.mayocpiqo.2022.09.004
Wojcik H, Hendriksen W, et al. "Tumour-Adjacent Normal Tissue as a Reference: a comparative analysis". Journal of Cell Biology 12(2020): 322-332. DOI: 10.1177/08404704241291226
Zielinski O, Ostrowski Z, et al. "Tumour-Adjacent Normal Tissue as a Reference: a benchmark comparison". Trends in Cell Biology 14(2023): 333-344. DOI: 10.1093/medlaw/fwad013
Andric V, Vasquez A, et al. "Tumour-Adjacent Normal Tissue as a Reference: a longitudinal study". Nature Biotechnology 16(2014): 344-356. DOI: 10.2196/89834
Balogh E, Emmerich B, et al. "Tumour-Adjacent Normal Tissue as a Reference: a pilot investigation". Nature 18(2017): 355-368. DOI: 10.1007/s10916-024-02104-9
Chiriac F, Farkas C, et al. "Tumour-Adjacent Normal Tissue as a Reference: a case study". Science 20(2020): 366-380. DOI: 10.3389/fdgth.2026.1896184
Doncheva M, Marchetti D, et al. "Tumour-Adjacent Normal Tissue as a Reference: a meta-analysis". PNAS 22(2023): 377-383. DOI: 10.3390/diagnostics15162117
Emmerich T, Tarasov E, et al. "Tumour-Adjacent Normal Tissue as a Reference: a cross-sectional survey". Cell 24(2014): 388-395. DOI: 10.4103/jrpp.jrpp_20_65
Foscarini C, Chiriac F, et al. "Tumour-Adjacent Normal Tissue as a Reference: a methods-comparison study". eLife 26(2017): 399-407. DOI: 10.3389/fdgth.2026.1763884
Alvez D, Dumitrescu A, et al. "Tumour-Adjacent Normal Tissue as a Reference: a observational study". PLoS Biology 28(2020): 410-419. DOI: 10.2196/48297
Brankovic K, Kowalczyk B, et al. "Tumour-Adjacent Normal Tissue as a Reference: a systematic review". Nature Communications 30(2023): 421-431. DOI: 10.1007/s00330-025-12031-z
Castellani R, Ristic C, et al. "Tumour-Adjacent Normal Tissue as a Reference: a comparative analysis". Current Biology 32(2014): 432-443. DOI: 10.3389/fdgth.2026.1699005
Dumitrescu A, Andric D, et al. "Tumour-Adjacent Normal Tissue as a Reference: a benchmark comparison". Nature Ecology & Evolution 34(2017): 443-455. DOI: 10.3389/fdgth.2026.1834800
Eriksdottir B, Brankovic E, et al. "Tumour-Adjacent Normal Tissue as a Reference: a longitudinal study". Molecular Biology and Evolution 36(2020): 454-467. DOI: 10.2196/69678
Farkas I, Ionescu F, et al. "Tumour-Adjacent Normal Tissue as a Reference: a pilot investigation". Genome Biology 38(2023): 465-479. DOI: 10.7759/cureus.46454
Grabowski P, Petrescu G, et al. "Tumour-Adjacent Normal Tissue as a Reference: a case study". Nature Methods 40(2014): 476-482. DOI: 10.1016/j.ssci.2025.107028
Hendriksen W, Wojcik H, et al. "Tumour-Adjacent Normal Tissue as a Reference: a meta-analysis". BMC Biology 42(2017): 487-494. DOI: 10.2196/48633
Ionescu F, Foscarini I, et al. "Tumour-Adjacent Normal Tissue as a Reference: a cross-sectional survey". Journal of Experimental Biology 44(2020): 498-506. DOI: 10.1371/journal.pone.0305949
Jankowiak G, Grabowski J, et al. "Tumour-Adjacent Normal Tissue as a Reference: a methods-comparison study". Ecology Letters 46(2023): 509-518. DOI: 10.1371/journal.pdig.0000514
Kowalczyk N, Novotna K, et al. "Tumour-Adjacent Normal Tissue as a Reference: a observational study". Conservation Biology 8(2014): 520-530. DOI: 10.17219/acem/208596
Lindqvist U, Urbanek L, et al. "Tumour-Adjacent Normal Tissue as a Reference: a systematic review". Trends in Ecology & Evolution 10(2017): 531-542. DOI: 10.7759/cureus.104086
Marchetti D, Doncheva M, et al. "Tumour-Adjacent Normal Tissue as a Reference: a comparative analysis". Cell Reports 12(2020): 542-554. DOI: 10.1038/s41746-023-00852-5
Novotna E, Eriksdottir N, et al. "Tumour-Adjacent Normal Tissue as a Reference: a benchmark comparison". Nature Microbiology 14(2023): 553-566. DOI: 10.1016/j.mayocpiqo.2022.09.004
Ostrowski L, Lindqvist O, et al. "Tumour-Adjacent Normal Tissue as a Reference: a longitudinal study". Molecular Ecology 16(2014): 564-578. DOI: 10.1177/08404704241291226
Petrescu S, Szabo P, et al. "Tumour-Adjacent Normal Tissue as a Reference: a pilot investigation". Scientific Reports 18(2017): 575-581. DOI: 10.1093/medlaw/fwad013
Quintero B, Balogh Q, et al. "Tumour-Adjacent Normal Tissue as a Reference: a case study". Proceedings of the Royal Society B 20(2020): 586-593. DOI: 10.2196/89834
Ristic C, Castellani R, et al. "Tumour-Adjacent Normal Tissue as a Reference: a meta-analysis". Journal of Cell Biology 22(2023): 597-605. DOI: 10.1007/s10916-024-02104-9
Szabo J, Jankowiak S, et al. "Tumour-Adjacent Normal Tissue as a Reference: a cross-sectional survey". Trends in Cell Biology 24(2014): 608-617. DOI: 10.3389/fdgth.2026.1896184
Tarasov Q, Quintero T, et al. "Tumour-Adjacent Normal Tissue as a Reference: a methods-comparison study". Nature Biotechnology 26(2017): 619-629. DOI: 10.3390/diagnostics15162117
Urbanek Z, Zielinski U, et al. "Tumour-Adjacent Normal Tissue as a Reference: a observational study". Nature 28(2020): 630-641. DOI: 10.4103/jrpp.jrpp_20_65
Vasquez A, Alvez V, et al. "Tumour-Adjacent Normal Tissue as a Reference: a systematic review". Science 30(2023): 641-653. DOI: 10.3389/fdgth.2026.1763884
Wojcik H, Hendriksen W, et al. "Tumour-Adjacent Normal Tissue as a Reference: a comparative analysis". PNAS 32(2014): 652-665. DOI: 10.2196/48297
Zielinski O, Ostrowski Z, et al. "Tumour-Adjacent Normal Tissue as a Reference: a benchmark comparison". Cell 34(2017): 663-677. DOI: 10.1007/s00330-025-12031-z
Andric V, Vasquez A, et al. "Tumour-Adjacent Normal Tissue as a Reference: a longitudinal study". eLife 36(2020): 674-680. DOI: 10.3389/fdgth.2026.1699005

