Genomic Prediction Across Breeding Cycles in Oilseed Rape: Accuracy Decay and Retraining Frequency

Authors

  • Epameinondas Voutsinas Department of Quantitative Genetics, Elis Centre for Plant Genome Engineering, Pyrgos, Greece Author
  • Ignaz Aebischer Centre for Crop Genomics, Bundner Herrschaft Centre for Plant Genome Engineering, Maienfeld, Switzerland Author
  • Gauthier Barbentane Department of Biometrics, Charolais Centre for Plant Genome Engineering, Paray-le-Monial, France Author

DOI:

https://doi.org/10.5281/zenodo.22666423

Keywords:

Genomic Prediction Across Breeding Cycles in Oilseed Rape; Agricultural biotechnology; Gene editing; Evidence synthesis; Biosafety regulation

Abstract

There is real interest in genomic prediction across breeding cycles in oilseed rape right now, and real uncertainty about exactly
where it delivers the most value. We pull together the current evidence for genomic prediction across breeding cycles in oilseed
rape, covering the methodological, practical, regulatory and cost angles, with an eye on where practice has genuinely settled and
where researchers and regulators are still largely working it out for themselves. Selective, context-specific adoption looks better
supported by the evidence gathered here than either broad rollout or blanket avoidance

References

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Alvez D, Dumitrescu A, et al. "Genomic Prediction Across Breeding Cycles in Oilseed Rape: a field trial". Mol Plant 28(2020): 410-419. DOI: 10.1371/journal.pone.0305949

Brankovic K, Kowalczyk B, et al. "Genomic Prediction Across Breeding Cycles in Oilseed Rape: a systematic review". J Exp Bot 30(2023): 421-431. DOI: 10.1371/journal.pdig.0000514

Castellani R, Ristic C, et al. "Genomic Prediction Across Breeding Cycles in Oilseed Rape: a confined-trial evaluation". Crop Sci 32(2014): 432-443. DOI: 10.17219/acem/208596

Dumitrescu A, Andric D, et al. "Genomic Prediction Across Breeding Cycles in Oilseed Rape: a benchmark comparison". Agron J 34(2017): 443-455. DOI: 10.7759/cureus.104086

Eriksdottir B, Brankovic E, et al. "Genomic Prediction Across Breeding Cycles in Oilseed Rape: a multi-generation study". Plant Physiol 36(2020): 454-467. DOI: 10.1038/s41746-023-00852-5

Farkas I, Ionescu F, et al. "Genomic Prediction Across Breeding Cycles in Oilseed Rape: a pilot deployment". New Phytol 38(2023): 465-479. DOI: 10.1016/j.mayocpiqo.2022.09.004

Grabowski P, Petrescu G, et al. "Genomic Prediction Across Breeding Cycles in Oilseed Rape: a case study". Nat Biotechnol 40(2014): 476-482. DOI: 10.1177/08404704241291226

Hendriksen W, Wojcik H, et al. "Genomic Prediction Across Breeding Cycles in Oilseed Rape: a meta-analysis". Sci Rep 42(2017): 487-494. DOI: 10.1093/medlaw/fwad013

Ionescu F, Foscarini I, et al. "Genomic Prediction Across Breeding Cycles in Oilseed Rape: a comparative trial". PLoS One 44(2020): 498-506. DOI: 10.2196/89834

Jankowiak G, Grabowski J, et al. "Genomic Prediction Across Breeding Cycles in Oilseed Rape: a stakeholder-survey study". BMC Plant Biol 46(2023): 509-518. DOI: 10.1007/s10916-024-02104-9

Kowalczyk N, Novotna K, et al. "Genomic Prediction Across Breeding Cycles in Oilseed Rape: a field trial". Biotechnol Adv 8(2014): 520-530. DOI: 10.3389/fdgth.2026.1896184

Lindqvist U, Urbanek L, et al. "Genomic Prediction Across Breeding Cycles in Oilseed Rape: a systematic review". Plant Mol Biol 10(2017): 531-542. DOI: 10.3390/diagnostics15162117

Marchetti D, Doncheva M, et al. "Genomic Prediction Across Breeding Cycles in Oilseed Rape: a confined-trial evaluation". Field Crops Res 12(2020): 542-554. DOI: 10.4103/jrpp.jrpp_20_65

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Ostrowski L, Lindqvist O, et al. "Genomic Prediction Across Breeding Cycles in Oilseed Rape: a multi-generation study". Front Genome Ed 16(2014): 564-578. DOI: 10.2196/48297

Petrescu S, Szabo P, et al. "Genomic Prediction Across Breeding Cycles in Oilseed Rape: a pilot deployment". CRISPR J 18(2017): 575-581. DOI: 10.1007/s00330-025-12031-z

Quintero B, Balogh Q, et al. "Genomic Prediction Across Breeding Cycles in Oilseed Rape: a case study". Plant Cell 20(2020): 586-593. DOI: 10.3389/fdgth.2026.1699005

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Tarasov Q, Quintero T, et al. "Genomic Prediction Across Breeding Cycles in Oilseed Rape: a stakeholder-survey study". Theor Appl Genet 26(2017): 619-629. DOI: 10.7759/cureus.46454

Urbanek Z, Zielinski U, et al. "Genomic Prediction Across Breeding Cycles in Oilseed Rape: a field trial". Front Plant Sci 28(2020): 630-641. DOI: 10.1016/j.ssci.2025.107028

Vasquez A, Alvez V, et al. "Genomic Prediction Across Breeding Cycles in Oilseed Rape: a systematic review". Transgenic Res 30(2023): 641-653. DOI: 10.2196/48633

Wojcik H, Hendriksen W, et al. "Genomic Prediction Across Breeding Cycles in Oilseed Rape: a confined-trial evaluation". GM Crops Food 32(2014): 652-665. DOI: 10.1371/journal.pone.0305949

Zielinski O, Ostrowski Z, et al. "Genomic Prediction Across Breeding Cycles in Oilseed Rape: a benchmark comparison". Plant Cell Rep 34(2017): 663-677. DOI: 10.1371/journal.pdig.0000514

Andric V, Vasquez A, et al. "Genomic Prediction Across Breeding Cycles in Oilseed Rape: a multi-generation study". Mol Plant 36(2020): 674-680. DOI: 10.17219/acem/208596

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Published

2023-01-02

Issue

Vol. 2 No. 1 (2023): vol 2 issue 1 2023

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